John Muir spent his early years on a farm near Portage at what is now the Fountain Lake Farm National Historic Landmark. Here he became an inventor, using his mechanical abilities to put science to a practical use in his farm work. During this time he began his lifelong pursuit of an education, through his reading and interactions with friends, as well as formally through his studies at the University of Wisconsin at Madison. A neighbor became his early mentor, sharing with John Muir his books as well as his experience and knowledge. It was later in his life that John Muir integrated his knowledge and experience into pursuit of his environmental vision. When searching for a name for what is now the John Muir Academy, his name was selected not only because of his Wisconsin connection, but also because of the similarities between his education and the mission of the John Muir Academy.  It is Standards/Assessment and Research based, with teachers experiencing the 'Best Practices' in their chosen workshop.

The success of students is the goal of the John Muir Academy. This can best be achieved through in-servicing and training of their teachers that promotes problem solving, development of higher level and creative thinking skills and experiential learning in math, science, technology, and other areas. It also demonstrates an effective regional business partnership with education. Keeping this in mind, the Academy has been designed, planned and delivered by the John Muir Academy Board of Directors and staff, Viterbo University and Edgewood College. It is Standards/Assessment and Research based, with teachers experiencing the 'Best Practices' in their chosen workshop.